Browsing by Author "Alkan, Ferhat"
Now showing items 1-4 of 4
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BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2014)Motivation: Global many-to-many alignment of biological networks has been a central problem in comparative biological network studies. Given a set of biological interaction networks the informal goal is to group together ... -
Global many- to - many aligment of multiple protein-protein interaction networks
Alkan, Ferhat (Kadir Has Üniversitesi, 2013)Proteins are essential parts of organisms and almost every biological process within a living cell is mediated by proteins and their interactions. Due to such importance, proteins are at the core of many researches in ... -
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2017)Motivation: Analysis of protein-protein interaction (PPI) networks provides invaluable insight into several systems biology problems. High-throughput experimental techniques together with computational methods provide ... -
SiPAN: simultaneous prediction and alignment of protein-protein interaction networks
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2015)Motivation: Network prediction as applied to protein-protein interaction (PPI) networks has received considerable attention within the last decade. Because of the limitations of experimental techniques for interaction ...